WGS Variant Calling: Variant calling with GATK - Part 1 | Detailed NGS Analysis Workflow
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WGS Variant Calling: Variant calling with GATK - Part 1 | Detailed NGS Analysis Workflow
This is a detailed workflow tutorial of how to call variants (SNPs + Indels) from whole genome sequencing (WGS) data. In this video, I follow GATK best practice workflow and walk through setting up a pipeline in bash (linux) and perform steps to pre-process & align reads and ultimately get a VCF file - • Quality control (fastQC) • Alignment ...
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